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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
ACC rs78474084 chr8:112977285 G/A KRT6C chr12:52862300-52867569:- 0.85 9.67 3.27E-13 Box Plot
ACC rs78527560 chr1:119586276 C/T PRHOXNB chr13:28552243-28562774:- 0.64 8.85 5.89E-12 Box Plot
ACC rs78554964 chr2:124914895 T/C GC chr4:72607410-72669758:- 0.68 9.87 1.65E-13 Box Plot
ACC rs78564993 chr5:120322085 A/C GAGE2D chrX:49207160-49214420:+ 1.22 11.62 4.6E-16 Box Plot
ACC rs7858580 chr9:28069562 A/G KRT6C chr12:52862300-52867569:- -0.71 -7.53 6.96E-10 Box Plot
ACC rs7859190 chr9:96557336 A/G PLEKHA7 chr11:16798864-17035990:- 1.1 7.56 6.36E-10 Box Plot
ACC rs78601708 chr6:62267867 C/T PRHOXNB chr13:28552243-28562774:- 0.59 7.82 2.45E-10 Box Plot
ACC rs78629413 chr1:116267605 A/T GAGE2D chrX:49207160-49214420:+ 0.7 8.29 4.38E-11 Box Plot
ACC rs78629413 chr1:116267605 A/T TFDP3 chrX:132350697-132352376:- 0.98 8.66 1.19E-11 Box Plot
ACC rs78639672 chr18:37084011 C/A PRHOXNB chr13:28552243-28562774:- 0.7 9.18 1.85E-12 Box Plot
ACC rs78641692 chr1:119735519 T/C PRHOXNB chr13:28552243-28562774:- 0.64 8.7 1.02E-11 Box Plot
ACC rs7865001 chr9:96546558 T/C PLEKHA7 chr11:16798864-17035990:- 1.1 7.56 6.36E-10 Box Plot
ACC rs78664615 chr1:119645166 T/C PRHOXNB chr13:28552243-28562774:- 0.63 9.01 3.35E-12 Box Plot
ACC rs78700690 chr6:105964455 C/T OR5V1 chr6:29323007-29399744:- 0.65 7.6 5.42E-10 Box Plot
ACC rs78730348 chr16:7890538 T/A OR5V1 chr6:29323007-29399744:- 0.68 9.02 3.24E-12 Box Plot